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Gopal Thinakaran

The Department of Neurobiology, Pharmacology and Physiology
The University of Chicago
924 E. 57th Street, Knapp R212
Chicago, IL 60637

gopal@uchicago.edu

 

Expertise:
Cell and Molecular Biology

Alzheimer’s Disease:
AD is the most common cause of dementia in the elderly. This progressive neurodegenerative disorder affects ~10% of individuals over 65 years of age and ~40% of persons over 80 years of age. At present approximately 4 million Americans are effected by AD. With the increasing life expectancy, it is predicted that this estimate will more than double by the year 2030 in the U.S. alone and account for 20 million patients worldwide, making AD one of the major health problems facing this nation and the world.

I) Amyloidogenic processing of APP: Pathological lesions called senile plaques found in the brains of AD patients contain extracellular deposits of 40-42 amino acid-long peptides, termed b -amyloid (A b ). A b holds a central position in AD pathogenesis; it is generated by sequential endoproteolytic processing of amyloid precursor protein (APP) by BACE and g -secretase. BACE is a transmembrane aspartyl protease and g -secretase is a multiprotein complex containing presenilin 1 or 2 (PS1or PS2), nicastrin, APH-1 and PEN-2. Mutations in genes encoding APP, PS1 and PS2 cosegregate with FAD, and enhance the production of highly amyloidogenic A b 42 peptides. We are using a combination of biochemical and subcellular fractionation and immunofluorescence localization strategies to unravel the subcellular and membrane microdomain organization of APP secretases and investigate amyloidogenic processing of APP and A b 40 and A b 42 production.

II) The role of PS1 in synaptic structure and function: Mounting evidence indicates that synaptic structures are the initial targets for AD, and memory deficits are mainly due to synaptic dysfunction in the earliest clinical stages of the disease. In addition to its role in A b production, PS1 also regulates other cellular functions such as protein trafficking, cellular calcium homeostasis, glutamatergic synaptic transmission etc. Interaction with select proteins such as b -catenin and cadherins play a role in the latter aspects of PS1 biology. Using PS1 knock out mice and transgenic mice expressing deletion mutants of PS1, we are testing the hypothesis that PS1- b -catenin/cadherin interaction(s) are critical for neuronal development during embryogenesis, and for the development of neuropathology in AD, i.e. A b deposition and alternations in synaptic structure and function. These studies utilize cell biology, electrophysiology, and live imaging strategies.

Biology of neuronal stress response:
In many neurodegenerative diseases such as AD, polyglutamine triplet disorders, Parkinson’s disease, and prion diseases, mutations in specific genes lead to misfolding of the encoded protein products and other cellular proteins. Thus, regardless of the etiology, several neurodegenerative diseases are characterized by the accumulation of misfolded proteins within the secretory pathway, cytoplasm or nucleus, and the association between protein aggregation and neurodegenerative diseases is an emerging field of study. My lab is specifically interested in protein folding stress within the secretory pathway. We are investigating the endoplasmic reticulum stress-related gene expression to identify common features involved in hypoxic and ischemic neuronal damage, aging, and neurodegeneration. These investigations utilize a variety of cell culture systems (to experimentally perturb protein folding) and well-characterized transgenic mouse and Drosophila models of neurodegenerative diseases (such as AD, Parkinson’s disease).

Laboratory personnel:
Dr. Angèle Parent, Ph.D., Research Associate (Associate Professor)
aparent@uchicago.edu

Dr. Vetrivel Subramaniam, Ph.D., Postdoctoral Fellow
vetrivel@uchicago.edu

Dr. Li Liu, M.D., Ph.D., Postdoctoral Fellow
liliu@bsd.uchicago.edu

Dr. Haipeng Cheng, Ph.D., Postdoctoral Fellow
hcheng@bsd.uchicago.edu

Dr. Ping Gong, Ph.D., Postdoctoral Fellow
gong_ping@hotmail.com

Dr. Jinhu Guo, Ph.D., Postdoctoral Fellow
jguo@bsd.uchicago.edu

Jim Bowen, Predoctoral Student
bowen@uchicago.edu

 

© 2005Center for Integrative Neuroscience and Neuroengineering
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